The aim of this study was to establish whether the type of the agricultural system has any influence on the essential oil production and antioxidant activity of industrial cultivated Rosa damascena Mill. in the Rose valley, Bulgaria. Six private farms from Kazanlak (Rose) Valley, Southern Bulgaria were included in the study conducted in the period 2019–2020. The first three selected farms are designated within the conventional farming and the other three are certificated as organic farms. GC/FID and GC/MS analyses were performed; the contents of total polyphenols and flavonoids in the methanol extracts from rose petals were determined. Additionally, the antioxidant activity of rose extracts was evaluated by four reliable methods: 2,2-diphenyl-1-picrylhydrazyl (DPPH), 2,2´-azino-bis-3-ethylbenzthiazoline-6-sulphonic acid (ABTS), ferric reducing antioxidant power (FRAP), and cupric reducing antioxidant capacity (CUPRAC) assays. The impact of the agricultural system on the essential oil composition and antioxidant activity was evaluated by ANOVA statistical analysis. The results obtained showed that organic farming produced essential oil with a higher linalool and geraniol content and lower β-citronellol + nerol concentrations than conventional farming. It was found that organic farming production demonstrated a better antioxidant activity evaluated by the three DPPH, ABTS, and CUPRAC methods according to the averaged data for two years, 806.82, 797.66 and 1534.40 mM TE/g dw versus 510.34, 521.94 and 917.48 mM TE/g dw for CF, respectively, with high statistical significance for the DPPH and ABTS analyses. Consequentially, the rose extracts from the organic farming accumulated more phenolic compounds that corresponded to the higher antioxidant potential of the organic roses.